Package: purgeR
Type: Package
Title: Inbreeding-Purging Estimation in Pedigreed Populations
Version: 1.8.3
Date: 2026-06-25
Authors@R: c(
    person("Eugenio", "López-Cortegano", email = "elcortegano@protonmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-6914-6305")))
Description: Inbreeding-purging analysis of pedigreed populations,
        including the computation of the inbreeding coefficient,
        partial, ancestral and purged inbreeding coefficients, and
        measures of the opportunity of purging related to the
        individual reduction of inbreeding load. In addition, functions
        to calculate the effective population size and other parameters
        relevant to population genetics are included. See
        López-Cortegano E. (2022) <doi:10.1093/bioinformatics/btab599>.
URL: https://gitlab.com/elcortegano/purgeR/
BugReports: https://gitlab.com/elcortegano/purgeR/-/work_items/
Encoding: UTF-8
License: GPL-2
Depends: R (>= 3.5.0)
Imports: doSNOW (>= 1.0.19), foreach (>= 1.5.1), parallel, progress (>=
        1.2.2), Rcpp (>= 1.0.5), RcppProgress (>= 0.4.2), shiny (>=
        1.7.3)
LinkingTo: Rcpp, RcppProgress
Suggests: caret (>= 6.0-86), coda (>= 0.19-4), dplyr (>= 1.0.0), e1071
        (>= 1.7-4), ggplot2 (>= 3.3.1), ggraph (>= 2.1.0), glmnet (>=
        4.0-2), gtable (>= 0.3.0), igraph (>= 1.5.0.1), knitr (>=
        1.28), magrittr (>= 1.5), pander (>= 0.6.3), plotly (>=
        4.10.1), plyr (>= 1.8.6), purrr (>= 0.3.4), rmarkdown (>=
        2.14), scales (>= 1.1.1), stringr (>= 1.4.0), testthat (>=
        2.3.2), tibble (>= 3.0.1), tidyr (>= 1.1.0), tidyselect (>=
        1.1.0)
VignetteBuilder: knitr, rmarkdown
LazyData: true
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: cmake make libuv1-dev zlib1g-dev
Repository: https://elcortegano.r-universe.dev
Date/Publication: 2026-06-25 21:01:49 UTC
RemoteUrl: https://gitlab.com/elcortegano/purger
RemoteRef: HEAD
RemoteSha: 7fac784c3dce6fea92c2248f8cc265d54cd2602c
NeedsCompilation: yes
Packaged: 2026-06-26 08:31:03 UTC; root
Author: Eugenio López-Cortegano [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-6914-6305>)
Maintainer: Eugenio López-Cortegano <elcortegano@protonmail.com>